Dr. Wampler's Lecture Notes for BCMB 8200

Different Concepts of Molecular Structure

Size Matters

Intra- and Inter-molecular Forces

Molecular Mechanics and Force Fields

Using a Molecular Mechanics Force Field

Minimization and Optimization

Parameters for Molecular Mechanics

Water models for Molecular Mechanics

Lab Instructions:
Notes and Tutorial for First Laboratory Session

Notes and Instructions for Second Laboratory Session


Supplementary Material:

An Introduction to Unix and Your account: Unix Nuts and Bolts
Web Tutorials: "To-the-Web, To-the-Web"
A Summary of simple HTML codes
Examples of student Web-based Lab Report

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